Horizons research projects
Research projects funded with remaining Te Niwha investment and aligned with the aims of Infectious Disease Research Aotearoa.
Horizons research projects
Infectious Diseases Research Aotearoa has announced its first funded research projects, investing in work that will:
- Support development of a faster, more accessible test for gonorrhoea.
- Reduce antimicrobial resistance by guiding use in primary care.
- Improve understanding of what respiratory viruses are currently circulating in the community, including those coming from overseas.
- Lead to better treatments for patients hospitalised with severe influenza.
Infectious Diseases Research Aotearoa is New Zealand’s national infectious diseases research platform, funded by the New Government to strengthen the country’s resilience to infectious diseases and future pandemic threats.
It builds on a programme of infectious diseases research delivered by Te Niwha. All Horizons projects carry on from succesful Te Niwha ones.
Find out about the Te Niwha programme and research projects.
Funded projects
Rapid nanobody-based diagnostics for gonorrhoea. Led by Dr Jo Hicks, University of Waikato.
This research project will identify antibodies that could be used to develop a test to identify gonorrhoea in clinics or community settings. Gonorrhoea is a common sexually transmitted infection with disproportionately high rates in Māori, Pacific Peoples and young adults. Many cases are asymptomatic, increasing the risk of untreated disease, infertility, and ongoing transmission. The research project will progress the science required for a test capable of more quickly detecting symptomatic and asymptomatic infections in a range of community settings to reduce treatment delays, improve testing access and support more targeted antibiotic use in the face of rising rising antibiotic resistance against the bacteria that causes gonorrhoea.
Study details
Gonorrhoea is the second most common sexually transmitted infection worldwide, with disproportionately high rates in Māori, Pacific Peoples and young adults in Aotearoa New Zealand. Up to half of infections in females are asymptomatic, increasing the risk of untreated disease, infertility and ongoing transmission.
Current diagnosis relies on laboratory-based nucleic acid amplification tests (NAATs), which can take up to a week, delaying treatment and creating barriers to care. Additionally, rising antibiotic resistance in Neisseria gonorrhoeae (gonococcus) further highlights the need for rapid and accurate diagnostics.
We propose developing a rapid point-of-care lateral flow assay targeting lipid oligosaccharide (LOS), a conserved and highly expressed gonococcal surface antigen involved in virulence. Our approach uses nanobodies (single-domain antibodies derived from camelids), which are highly stable, specific and well suited for portable diagnostics. We have already identified LOS-binding nanobodies and will optimise these for a low-cost assay capable of detecting both symptomatic and asymptomatic gonorrhoea infections quickly, in low resource settings.
A nanobody-based detection scheme can be translated to different pathogens if the nanobody sequence is changed. The methodology established here, and in a related project developing carbon-based nanobody diagnostics for Norovirus, can be applied to develop nanobodies against any conserved antigen, enabling broad diagnostic development for infectious organisms. We will disseminate not only the results of our project but also the capability in developing this technology.
Research Design and Methodology
This project builds on a 6-month Te Niwha funded project. Using both synthetic nanobody libraries and llama immunisation approaches, we identified nanobodies that recognise conserved regions of gonococcal LOS. Synthetic libraries were screened using phage display against the conserved 2C7 LOS epitope, leading to the identification and affinity maturation of lead nanobody candidates. To improve recognition of native LOS, additional screening rounds alternating between purified LOS and the 2C7 peptide identified four lead nanobodies with cross-reactivity to both targets. However, further characterisation revealed weak binding to purified gonococcal LOS. In parallel, a biological nanobody library was generated through llama immunisation and phage display in collaboration with the University of Zurich, which identified an additional four nanobody binders from diverse antibody gene families. Here we will characterise lead nanobodies from the llama immunisation for stability, specificity, and diagnostic suitability. \
Nanobodies will be expressed in Escherichia coli and purified using our existing protocols. Binding affinities to both 2C7 and LOS will be tested via established ELISAs and confirmed in higher resolution by z or isothermal titration calorimetry. Nanobodies will also be tested for stability and binding under various physiological conditions including temperature, pH, and salt to determine limitations for use in a lateral flow test.
Binding to clinical N. gonorrhoeae isolates (in collaboration of AI Broomhead) will be assessed using ELISAs, flow cytometry and confocal microscopy. Specificity testing will include screening against commensal Neisseria species to assess cross-reactivity.
Contingency plan: Although unlikely given pre-screening conducted in Zurich obtained binders, if none of the lead nanobodies bind LOS/2C7 with high affinity we will go back to the original immune library (from the llama immunisation) and use phage display to screen for LOS binders.
We will characterise the three-dimensional structure of our lead nanobody(s) bound to LOS and/or 2C7 to inform binding improvements and molecular modelling. With collaborators at Cardiff University (Prof Dafydd Jones), we will perform molecular dynamics simulations to determine sites for conjugation of the nanobody to planar surfaces to obtain information about the most optimal conjugation orientations for preserving detection sensitivity. These interdisciplinary approaches will ensure the limits of detection are as a low as possible for future devices.
At the end of the one-year project we anticipate having a conjugation ready nanobody that can be used for prototype testing with clinical samples.
Tupu Whakaritorito: antimicrobial stewardship and equity in primary care. Led by Dr Karen Wright, University of Auckland.
Most antibiotics are prescribed in primary care settings such as GP clinics, making it a critical environment for tackling the serious issue of antimicrobial resistance. A new research project will build on work funded by Te Niwha, which developed Te Whata Kura national antibiotic guidelines that are now being used around the country in both hospital and community settings.
Study details
In Aotearoa New Zealand there are large inequities in infectious disease incidence and outcomes. Increasing antimicrobial resistance (AMR) magnifies the risk of infectious disease, threatening successful treatment and prevention
With 95% of antibiotic prescribing occurring in primary care, appropriate antibiotic prescribing is a critical intervention point to address health inequities and support antimicrobial stewardship (AMS). However, prescribers currently lack practical, equity-centred approaches to monitor and support consistent, appropriate prescribing.
In 2025, a Te Niwha-funded project resulted in the development of Te Whata Kura national antibiotic guidelines. The availability of national guidelines on a single platform provides a consistent benchmark to support appropriate antibiotic prescribing, AMS and equity.
This Horizon project aims to build on previous research and advance AMS and equity through innovations to support consistent and appropriate antibiotic prescribing and primary care.
One innovation is a framework to embed cultural safety in antibiotic and other clinical guidelines. Uptake and usage of Te Whata Kura guidelines have exceeded expectations. However, while antibiotic guidelines provide evidence-based recommendations, they do not guarantee best practice prescribing and equity.
Cultural safety provides a framework to support critical reflection on clinical guideline development processes, content, and use to support excellent care and health equity. Previous qualitative research exploring whānau Māori perspectives on antibiotic guidelines use identified an expectation for culturally safe guidelines that are responsive to people and context.
The second innovation is an evidence-and user-informed data sharing approach that utilises storytelling. Research has shown that sharing quantitative data alone with prescribers seldom results in sustainable behaviour change. Storytelling is an emergent approach that seeks to contextualise and communicate data effectively through the inclusion of narrative or stories. The concept is broad and ranges from comparative data sharing accompanies by messaging promoting behaviour change, to using narrative and patient stories to make data feedback even more memorable, engaging and emotionally resonant.
Primary care and prescriber insights will inform development of an antibiotic prescribing data sharing prototype that meets their needs, integrates storytelling, and is compatible with primary care data structures.
Community pharmacy surveillance for influenza-like illness. Led by Dr Alex Semprini, MRINZ.
This study is part of a programme exploring whether community pharmacies can help New Zealand find respiratory viruses earlier, especially among people who may not be captured by existing surveillance systems.
Researchers will offer testing for respiratory viruses such as influenza to people attending pharmacies, including international visitors and New Zealanders not enrolled with a general practice. The study, aimed at strengthening national surveillance systems, will be done through pharmacies in 10 to 15 locations from Northland to Queenstown.
The project, done in collaboration with PHF Science who will process the samples, focuses on groups that could be missed by existing GP or hospital-based monitoring systems. It builds on a Te Niwha funded study showing community pharmacies can safely and effectively support gold-standard community respiratory virus surveillance.
More details
Respiratory viruses such as SARS-CoV-2 and influenza pose a major pandemic threat, yet New Zealand’s surveillance system, which comprises hospital monitoring in Auckland, national voluntary laboratory referrals and the ~30 practice Sentinel General Practice Respiratory Virus Surveillance network (SGPRVS), remains biased toward severe disease and people who can access GP care.
Many New Zealanders face barriers to primary care, including lack of GP enrolment, practices closing their books, workforce shortages, cost, and transport difficulties in rural areas, while international visitors are effectively invisible to surveillance.
Community pharmacies are accessible, open extended hours and require no appointment or registration. A feasibility study by MRINZ and PHF Science in the MRINZ Pharmacy Research Network collected 467 pharmacist-taken nasopharyngeal swabs from GP-registered adults between 2024 and 2025. It showed the approach to be feasible, safe (0.4% minor adverse events) and highly acceptable, with viral detection comparable to the SGPRVS (51% vs 52.3%; p=0.59).
This next-stage prospective, cross-sectional study will extend the model to international visitors and adults not registered with a GP. It will recruit 200 people aged 18 or over with influenza-like illness across 10 pharmacies between August 2026 and May 2027, including new sites in tourist areas.
Swabs will undergo RT-PCR multiplex testing and whole-genome sequencing of priority pathogens at PHF Science, the NZ WHO National Influenza Centre. Positivity and pathogen distribution will be compared by visitor and GP-registration status and against concurrent SGPRVS data. At the expected 51% positivity, the study should yield about 102 positive samples (95% CI ±7%), and the international visitor subgroup (~40 participants) will inform power calculations for a future whole-system study that will also include children.
Findings will be published and shared with research partners, stakeholders and communities, supporting formal adoption of pharmacy-based surveillance as a scalable complement to the SGPRVS that can provide surge capacity during a pandemic.
REMAP-CAP: Improving outcomes for severe seasonal influenza. Led by Dr Tom Hills, MRINZ.
REMAP-CAP is an international clinical trial platform that evaluates multiple treatments for severe respiratory diseases such as influenza and pneumonia in hospitals, enabling useful findings to reach patients faster.
With funding from Te Niwha, New Zealand's previous national infectious diseases research investment, MRINZ researchers – who lead the REMAP-CAP study in Aotearoa New Zealand – recently produced evidence on a treatment for patients critically ill with severe seasonal influenza that is already starting to save lives.
New Infectious Diseases Research Aotearoa funding will build on that progress by testing promising treatments for severe influenza that may improve recovery, including medicines that reduce harmful inflammation and further antiviral medication treatment.
Study purpose and background
More than 17,000 New Zealanders people are hospitalised with pneumonia or influenza each year, with Māori and Pacific Peoples experiencing higher mortality.
This project will test promising treatments for severe influenza, including immunomodulators, corticosteroids and antiviral strategies, while collecting biological samples to better understand disease mechanisms.
By rapidly generating evidence that can change clinical guidance, the work will improve care for seriously ill patients, strengthen pandemic preparedness and build national research capability for future infectious disease threats.
About REMAP-CAP
The Randomised Embedded Multifactorial Adaptive Platform trial for Community-Acquired Pneumonia (REMAP-CAP) is an adaptive learning healthcare platform for evaluation and implementation of therapeutics for hospitalised patients with acute respiratory tract infections. In contrast to conventional randomised clinical trials, REMAP-CAP’s innovative design allows multiple clinical questions to be answered quickly, efficiently, and at low cost. REMAP-CAP was founded on international collaboration and has strong leadership from Aotearoa New Zealand. It has proven capability in generating high-impact practice-changing evidence during the COVID-19 pandemic, with over 16,000 participants recruited globally and multiple high-impact and practice-changing publications.
In REMAP-CAP, participants are randomised across multiple treatment domains, increasing efficiency. There is no fixed sample size; instead, regular Bayesian adaptive analyses are conducted, and recruitment continues until pre-specified triggers for superiority, futility, harm, non-inferiority, or equivalence are reached. The primary endpoint is a hierarchical ordinal scale comprising 90-day mortality, duration of organ support, and hospital length of stay. Response-adaptive randomisation increases allocation to better-performing interventions over time, allowing participants to benefit from accumulated evidence while contributing to future learning. Multi-domain randomisation also enables evaluation of treatment interactions that would not be feasible in conventional trials. An embedded registry and linked post discharge data support long-term outcome assessment.
REMAP-CAP and Te Niwha
With support from Te Niwha, the REMAP-CAP trial asked key clinical questions about the optimal management of seasonal influenza, including:
Whether antiviral treatments (oseltamivir or baloxavir) improve outcomes for patients hospitalised with influenza.
Whether corticosteroids (dexamethasone or hydrocortisone) improve outcomes in severe influenza.
Whether an immunomodulator (tocilizumab) that is effective in COVID-19 improves outcomes in severe influenza.
The Te Niwha funding provided a foundation for the Infectious Diseases Research Aotearoa-funded Horizon project.
Oseltamivir is the most widely used influenza antiviral globally, and clinical guidelines recommend that oseltamivir treatment is given to critically ill patients with influenza. However, despite this widespread use, there has never been a randomised clinical trial evaluating oseltamivir in critically ill patients. REMAP-CAP recently found that oseltamivir is ineffective in critically ill adults and may cause harm. This result was presented as a late-breaking result at an international critical care conference. The Te Whata Kura national antibiotic guideline rapidly updated the guidance for critically ill adults, recommending against the use of oseltamivir, while the peer review publication is awaited.
The next REMAP-CAP phase, funded by Infectious Diseases Research Aotearoa will:
Continue evaluation of immunomodulation (tocilizumab) in critical illness and corticosteroids in patients receiving supplemental oxygen
Continue to evaluate baloxavir in hospitalised patients with influenza.
Collect biological samples to define host immune responses and disease mechanisms (in collaboration with the PHF Science-based SHIVERS study (link to SHIVERS info).
Investigate heterogeneity of treatment effect observed with oseltamivir across disease severity.
Compare enrolled and non-enrolled ICU patients to assess representativeness and improve generalisability.
Maintain readiness to evaluate emerging therapies during future influenza or novel respiratory pathogen pandemics (e.g. Andes hantavirus).
New Zealanders are leaders in the global REMAP-CAP platform. Their networks and this work will help grow connections to experts and research networks internationally that will strengthen New Zealand’s ability to respond to future infectious disease threats or pandemics